Variant report

Variant	rs58678528
Chromosome Location	chr7:11789397-11789398
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10226967	0.92[AFR][1000 genomes]
rs10229322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231554	1.00[AMR][1000 genomes]
rs10231987	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237471	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242153	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242780	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10246079	1.00[AMR][1000 genomes]
rs10248531	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262283	0.83[AFR][1000 genomes]
rs10280252	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28409613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28414693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28479746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28609564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28712322	1.00[AMR][1000 genomes]
rs57993664	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58204711	1.00[AMR][1000 genomes]
rs60309391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6950525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6963014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6970485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887612	chr7:11756776-11806289	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv887613	chr7:11766964-11806289	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv970796	chr7:11787992-11794418	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11783000-11793000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:11788800-11791600	Enhancers	Placenta	Placenta
3	chr7:11789000-11789400	Enhancers	Stomach Mucosa	stomach
4	chr7:11789000-11790200	Active TSS	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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