Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10252540	0.80[AFR][1000 genomes]
rs10282069	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766952	0.87[EUR][1000 genomes]
rs11769345	0.87[EUR][1000 genomes]
rs11769406	0.87[EUR][1000 genomes]
rs11770922	0.89[EUR][1000 genomes]
rs11773861	0.91[EUR][1000 genomes]
rs13437911	0.87[ASN][1000 genomes]
rs4266531	0.87[EUR][1000 genomes]
rs4415203	0.86[AFR][1000 genomes]
rs4559132	0.87[AFR][1000 genomes]
rs66521840	0.88[EUR][1000 genomes]
rs66669140	0.91[EUR][1000 genomes]
rs66697341	0.88[EUR][1000 genomes]
rs67794814	0.89[EUR][1000 genomes]
rs68034409	0.88[EUR][1000 genomes]
rs6944780	0.87[AFR][1000 genomes]
rs6954586	0.89[AFR][1000 genomes]
rs6957491	0.89[AFR][1000 genomes]
rs6957520	0.80[AFR][1000 genomes]
rs6957959	0.89[AFR][1000 genomes]
rs6958935	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1031147	chr7:66811313-66922350	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1025049	chr7:66823977-66906930	Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv33523	chr7:66855435-66958898	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10248466	VKORC1L1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66869600-66870400	Enhancers	Colon Smooth Muscle	Colon

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