Variant report
| Variant | rs6954586 |
|---|---|
| Chromosome Location | chr7:66863062-66863063 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10240702 | 0.86[ASN][1000 genomes] |
| rs10248466 | 0.89[AFR][1000 genomes] |
| rs10252540 | 0.85[AFR][1000 genomes] |
| rs10252775 | 0.82[AFR][1000 genomes] |
| rs10258740 | 0.85[AFR][1000 genomes] |
| rs10258752 | 0.84[AFR][1000 genomes] |
| rs10260778 | 1.00[ASN][1000 genomes] |
| rs10260941 | 0.85[AFR][1000 genomes] |
| rs10269173 | 0.85[AFR][1000 genomes] |
| rs2110004 | 0.86[ASN][1000 genomes] |
| rs2159849 | 0.82[AFR][1000 genomes] |
| rs2421291 | 0.82[AFR][1000 genomes] |
| rs4415203 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4470898 | 0.84[AFR][1000 genomes] |
| rs4559132 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4718555 | 1.00[ASN][1000 genomes] |
| rs4718556 | 1.00[ASN][1000 genomes] |
| rs67069756 | 0.82[ASN][1000 genomes] |
| rs6944780 | 0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6957491 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6957520 | 0.86[AFR][1000 genomes] |
| rs6957959 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6958935 | 0.85[AFR][1000 genomes] |
| rs6959092 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6978978 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888330 | chr7:66502171-66877880 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 39 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031147 | chr7:66811313-66922350 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1025049 | chr7:66823977-66906930 | Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv33523 | chr7:66855435-66958898 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:66859800-66864600 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 2 | chr7:66862400-66863200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
