Variant report

Variant	rs2421291
Chromosome Location	chr7:66857873-66857874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66856859..66858400-chr7:66949972..66951683,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10237064	0.84[ASN][1000 genomes]
rs10252540	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10252775	0.98[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10258740	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10258752	0.91[AFR][1000 genomes]
rs10260941	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10269173	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10282383	0.84[ASN][1000 genomes]
rs2110006	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2159849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2277020	0.82[ASN][1000 genomes]
rs2277022	0.83[ASN][1000 genomes]
rs28627817	0.83[ASN][1000 genomes]
rs4415203	0.80[AFR][1000 genomes]
rs4470898	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4559132	0.80[AFR][1000 genomes]
rs4570024	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55852950	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58299686	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58419668	0.85[EUR][1000 genomes]
rs61629198	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6945249	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6952460	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6954586	0.82[AFR][1000 genomes]
rs6957491	0.82[AFR][1000 genomes]
rs6957520	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6957959	0.80[AFR][1000 genomes]
rs6958935	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6967566	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1031147	chr7:66811313-66922350	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1025049	chr7:66823977-66906930	Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv33523	chr7:66855435-66958898	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66855000-66858200	Enhancers	Fetal Brain Male	brain
2	chr7:66856400-66858000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:66857800-66858200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
4	chr7:66857800-66858200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr7:66857800-66858200	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr7:66857800-66858200	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr7:66857800-66858400	Active TSS	H9 Cell Line	embryonic stem cell
8	chr7:66857800-66858400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr7:66857800-66858600	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr7:66857800-66859600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links