Variant report

Variant	rs4570024
Chromosome Location	chr7:66859605-66859606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66857902..66861234-chr7:66864878..66868630,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10237064	0.82[ASN][1000 genomes]
rs10252540	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10252775	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10258740	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10258752	0.87[AFR][1000 genomes]
rs10260941	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10269173	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10282383	0.82[ASN][1000 genomes]
rs2110006	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2159849	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2277022	0.81[ASN][1000 genomes]
rs2421291	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28627817	0.81[ASN][1000 genomes]
rs4470898	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs55852950	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58299686	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58419668	0.83[EUR][1000 genomes]
rs61629198	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6945249	0.84[EUR][1000 genomes]
rs6952460	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6957520	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6958935	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6967566	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1031147	chr7:66811313-66922350	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1025049	chr7:66823977-66906930	Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv33523	chr7:66855435-66958898	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3478290	chr7:66858334-66859731	Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3515699	chr7:66858401-66859794	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3515700	chr7:66858401-66859794	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3478291	chr7:66858425-66859649	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66858800-66862800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:66859600-66859800	Transcr. at gene 5' and 3'	H9 Cell Line	embryonic stem cell

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