Variant report
| Variant | rs10248862 |
|---|---|
| Chromosome Location | chr7:145166408-145166409 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11976561 | 0.96[ASN][1000 genomes] |
| rs17169716 | 0.96[ASN][1000 genomes] |
| rs56300133 | 0.96[ASN][1000 genomes] |
| rs6974092 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73154701 | 0.92[ASN][1000 genomes] |
| rs73154702 | 0.96[ASN][1000 genomes] |
| rs73156705 | 0.96[ASN][1000 genomes] |
| rs73156706 | 0.96[ASN][1000 genomes] |
| rs73156707 | 0.96[ASN][1000 genomes] |
| rs73156708 | 0.96[ASN][1000 genomes] |
| rs73156710 | 0.96[ASN][1000 genomes] |
| rs73156711 | 0.96[ASN][1000 genomes] |
| rs73156712 | 0.89[ASN][1000 genomes] |
| rs73156713 | 0.96[ASN][1000 genomes] |
| rs73156714 | 0.96[ASN][1000 genomes] |
| rs73156719 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1026333 | chr7:145094377-145283848 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1029730 | chr7:145125332-145253704 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10248862 | OR2A5 | cis | cerebellum | SCAN |
| rs10248862 | MGAM | cis | parietal | SCAN |
| rs10248862 | PRSS37 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:145166400-145166800 | ZNF genes & repeats | Pancreas | Pancrea |
