Variant report

Variant	rs6974092
Chromosome Location	chr7:145169598-145169599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10248862	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11976561	0.96[ASN][1000 genomes]
rs17169716	0.96[ASN][1000 genomes]
rs56300133	0.96[ASN][1000 genomes]
rs73154701	0.92[ASN][1000 genomes]
rs73154702	0.96[ASN][1000 genomes]
rs73156705	0.96[ASN][1000 genomes]
rs73156706	0.96[ASN][1000 genomes]
rs73156707	0.96[ASN][1000 genomes]
rs73156708	0.96[ASN][1000 genomes]
rs73156710	0.96[ASN][1000 genomes]
rs73156711	0.96[ASN][1000 genomes]
rs73156712	0.89[ASN][1000 genomes]
rs73156713	0.96[ASN][1000 genomes]
rs73156714	0.96[ASN][1000 genomes]
rs73156719	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026333	chr7:145094377-145283848	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1029730	chr7:145125332-145253704	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6974092	PRSS37	cis	parietal	SCAN
rs6974092	MGAM	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145169000-145171000	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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