Variant report

Variant	rs10249686
Chromosome Location	chr7:41272267-41272268
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10227700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10229814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10237287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237571	1.00[AFR][1000 genomes]
rs10252274	1.00[AFR][1000 genomes]
rs10269085	1.00[AFR][1000 genomes]
rs28447325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28473354	1.00[AFR][1000 genomes]
rs28562830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28694782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28761773	1.00[AMR][1000 genomes]
rs7788489	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41259400-41278400	Weak transcription	HSMM	muscle
2	chr7:41265000-41296600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:41271200-41273600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:41271800-41273000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:41272000-41272800	Weak transcription	Osteobl	bone
6	chr7:41272000-41274000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:41272000-41277200	Weak transcription	NHDF-Ad	bronchial
8	chr7:41272200-41273000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:41272200-41273800	Weak transcription	HMEC	breast
10	chr7:41272200-41274200	Weak transcription	NHEK	skin
11	chr7:41272200-41277000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:41272200-41277200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:41272200-41277200	Weak transcription	Hela-S3	cervix
14	chr7:41272200-41277800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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