Variant report

Variant	rs7788489
Chromosome Location	chr7:41114454-41114455
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10227700	1.00[AFR][1000 genomes]
rs10229814	1.00[AFR][1000 genomes]
rs10237287	1.00[AFR][1000 genomes]
rs10237571	1.00[AFR][1000 genomes]
rs10249686	1.00[AFR][1000 genomes]
rs10252274	1.00[AFR][1000 genomes]
rs10269085	1.00[AFR][1000 genomes]
rs28447325	1.00[AFR][1000 genomes]
rs28473354	1.00[AFR][1000 genomes]
rs28562830	1.00[AFR][1000 genomes]
rs28694782	1.00[AFR][1000 genomes]
rs37256	1.00[ASN][1000 genomes]
rs73687958	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41101000-41117800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:41112000-41127800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links