Variant report

Variant	rs10250323
Chromosome Location	chr7:147357077-147357078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10232275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28409404	0.83[AMR][1000 genomes]
rs28444108	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv527018	chr7:147337742-147360817	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147355400-147357200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:147355400-147357400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:147355600-147357200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:147355600-147357400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:147355600-147357800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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