Variant report

Variant	rs10251641
Chromosome Location	chr7:140093760-140093761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140093645..140095199-chr7:140096784..140098724,2	MCF-7	breast:
2	chr7:140092620..140094140-chr7:140148753..140150999,2	K562	blood:

Variant related genes	Relation type
ENSG00000157800	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10231060	0.91[AFR][1000 genomes]
rs10236384	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12113744	0.83[AMR][1000 genomes]
rs57892631	0.83[AMR][1000 genomes]
rs59073580	0.83[AMR][1000 genomes]
rs60977826	0.83[AMR][1000 genomes]
rs73476806	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022919	chr7:140043299-140120546	Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2762706	chr7:140054170-140119629	Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv522190	chr7:140066411-140130663	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140033600-140096000	Weak transcription	Stomach Mucosa	stomach
2	chr7:140052000-140097400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:140058600-140096000	Weak transcription	Small Intestine	intestine
4	chr7:140058800-140097200	Weak transcription	Brain Anterior Caudate	brain
5	chr7:140076800-140096200	Weak transcription	NHLF	lung
6	chr7:140080200-140095800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr7:140080200-140096000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr7:140080200-140097200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:140080200-140097200	Weak transcription	HSMMtube	muscle
10	chr7:140080200-140097600	Weak transcription	Brain Angular Gyrus	brain
11	chr7:140080600-140096200	Weak transcription	HepG2	liver
12	chr7:140080600-140097400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:140080800-140096200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:140081400-140097200	Weak transcription	Brain Germinal Matrix	brain
15	chr7:140082200-140096200	Weak transcription	Fetal Lung	lung
16	chr7:140082200-140097000	Weak transcription	Fetal Brain Female	brain
17	chr7:140082200-140097400	Weak transcription	Right Ventricle	heart
18	chr7:140082400-140095800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:140082400-140096000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:140082400-140096000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:140082400-140096400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr7:140082400-140096600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr7:140082400-140096600	Weak transcription	Fetal Muscle Leg	muscle
24	chr7:140082400-140097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:140082400-140097200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:140082400-140097200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr7:140082400-140097400	Weak transcription	Fetal Intestine Large	intestine
28	chr7:140082400-140097400	Weak transcription	Ovary	ovary
29	chr7:140084600-140096000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:140086200-140097200	Weak transcription	Psoas Muscle	Psoas
31	chr7:140086600-140096000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:140086800-140097200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:140090400-140096200	Weak transcription	Adipose Nuclei	Adipose
34	chr7:140090400-140097400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr7:140090800-140096000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr7:140090800-140096000	Weak transcription	HMEC	breast
37	chr7:140090800-140096400	Weak transcription	NHDF-Ad	bronchial
38	chr7:140090800-140097400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr7:140090800-140097600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr7:140090800-140097600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr7:140090800-140097600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr7:140090800-140097600	Weak transcription	Spleen	Spleen
43	chr7:140091000-140095800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr7:140091000-140096000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr7:140091000-140096200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr7:140091000-140096400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr7:140091000-140096400	Weak transcription	NH-A	brain
48	chr7:140091000-140097200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr7:140091000-140097200	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr7:140091000-140097200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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