Variant report

Variant	rs10231060
Chromosome Location	chr7:140088984-140088985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10236384	0.95[AFR][1000 genomes]
rs10251641	0.91[AFR][1000 genomes]
rs3936105	0.90[EUR][1000 genomes]
rs4524706	1.00[EUR][1000 genomes]
rs9791872	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022919	chr7:140043299-140120546	Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2762706	chr7:140054170-140119629	Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv522190	chr7:140066411-140130663	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140033600-140096000	Weak transcription	Stomach Mucosa	stomach
2	chr7:140049200-140090200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:140052000-140097400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:140058600-140096000	Weak transcription	Small Intestine	intestine
5	chr7:140058800-140097200	Weak transcription	Brain Anterior Caudate	brain
6	chr7:140059400-140091400	Weak transcription	Fetal Heart	heart
7	chr7:140068000-140089000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:140069600-140091800	Weak transcription	Esophagus	oesophagus
9	chr7:140076600-140090000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr7:140076600-140090200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr7:140076800-140089600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:140076800-140089600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr7:140076800-140096200	Weak transcription	NHLF	lung
14	chr7:140078200-140090000	Weak transcription	Pancreas	Pancrea
15	chr7:140080200-140089400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:140080200-140089800	Weak transcription	HSMM	muscle
17	chr7:140080200-140090200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr7:140080200-140090200	Weak transcription	HMEC	breast
19	chr7:140080200-140095800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr7:140080200-140096000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr7:140080200-140097200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:140080200-140097200	Weak transcription	HSMMtube	muscle
23	chr7:140080200-140097600	Weak transcription	Brain Angular Gyrus	brain
24	chr7:140080600-140089000	Weak transcription	Spleen	Spleen
25	chr7:140080600-140089600	Weak transcription	Brain Hippocampus Middle	brain
26	chr7:140080600-140089800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr7:140080600-140090000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr7:140080600-140090200	Weak transcription	Primary T cells from cord blood	blood
29	chr7:140080600-140090400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr7:140080600-140096200	Weak transcription	HepG2	liver
31	chr7:140080600-140097400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr7:140080800-140089800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr7:140080800-140090600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr7:140080800-140096200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr7:140081400-140097200	Weak transcription	Brain Germinal Matrix	brain
36	chr7:140081600-140089200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr7:140081800-140093000	Weak transcription	Fetal Intestine Small	intestine
38	chr7:140082000-140089600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr7:140082200-140089800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr7:140082200-140090200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr7:140082200-140090200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr7:140082200-140090200	Weak transcription	NH-A	brain
43	chr7:140082200-140093000	Weak transcription	Fetal Stomach	stomach
44	chr7:140082200-140096200	Weak transcription	Fetal Lung	lung
45	chr7:140082200-140097000	Weak transcription	Fetal Brain Female	brain
46	chr7:140082200-140097400	Weak transcription	Right Ventricle	heart
47	chr7:140082400-140089000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr7:140082400-140089000	Weak transcription	Primary B cells from cord blood	blood
49	chr7:140082400-140089000	Weak transcription	Primary B cells from peripheral blood	blood
50	chr7:140082400-140089000	Weak transcription	Primary T cells fromperipheralblood	blood

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