Variant report

Variant	rs4524706
Chromosome Location	chr7:140084355-140084356
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140075072..140077306-chr7:140082163..140084967,2	K562	blood:
2	chr7:140082007..140083740-chr7:140084020..140086777,2	K562	blood:
3	chr7:140083221..140084901-chr7:140097798..140099847,2	K562	blood:
4	chr7:140081489..140083919-chr7:140084216..140086210,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238868	Chromatin interaction
ENSG00000157800	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10231060	1.00[EUR][1000 genomes]
rs3936105	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9791872	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022919	chr7:140043299-140120546	Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2762706	chr7:140054170-140119629	Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv522190	chr7:140066411-140130663	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140033600-140096000	Weak transcription	Stomach Mucosa	stomach
2	chr7:140034800-140085600	Weak transcription	Psoas Muscle	Psoas
3	chr7:140042000-140084800	Weak transcription	Hela-S3	cervix
4	chr7:140049200-140090200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:140052000-140097400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:140058600-140096000	Weak transcription	Small Intestine	intestine
7	chr7:140058800-140084400	Weak transcription	Gastric	stomach
8	chr7:140058800-140097200	Weak transcription	Brain Anterior Caudate	brain
9	chr7:140059400-140091400	Weak transcription	Fetal Heart	heart
10	chr7:140068000-140089000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:140069600-140091800	Weak transcription	Esophagus	oesophagus
12	chr7:140076400-140088800	Weak transcription	GM12878-XiMat	blood
13	chr7:140076600-140084800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr7:140076600-140090000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:140076600-140090200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr7:140076800-140084400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:140076800-140089600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:140076800-140089600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr7:140076800-140096200	Weak transcription	NHLF	lung
20	chr7:140077200-140084600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr7:140078200-140090000	Weak transcription	Pancreas	Pancrea
22	chr7:140080200-140084600	Weak transcription	HUVEC	blood vessel
23	chr7:140080200-140084800	Weak transcription	Fetal Kidney	kidney
24	chr7:140080200-140085400	Weak transcription	Brain Substantia Nigra	brain
25	chr7:140080200-140089400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:140080200-140089800	Weak transcription	HSMM	muscle
27	chr7:140080200-140090200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:140080200-140090200	Weak transcription	HMEC	breast
29	chr7:140080200-140095800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr7:140080200-140096000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr7:140080200-140097200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:140080200-140097200	Weak transcription	HSMMtube	muscle
33	chr7:140080200-140097600	Weak transcription	Brain Angular Gyrus	brain
34	chr7:140080600-140085000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr7:140080600-140088800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr7:140080600-140089000	Weak transcription	Spleen	Spleen
37	chr7:140080600-140089600	Weak transcription	Brain Hippocampus Middle	brain
38	chr7:140080600-140089800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr7:140080600-140090000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr7:140080600-140090200	Weak transcription	Primary T cells from cord blood	blood
41	chr7:140080600-140090400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr7:140080600-140096200	Weak transcription	HepG2	liver
43	chr7:140080600-140097400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr7:140080800-140085200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:140080800-140089800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:140080800-140090600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr7:140080800-140096200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr7:140081400-140097200	Weak transcription	Brain Germinal Matrix	brain
49	chr7:140081600-140089200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr7:140081800-140093000	Weak transcription	Fetal Intestine Small	intestine

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