Variant report

Variant	rs10252761
Chromosome Location	chr7:39224417-39224418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10231896	1.00[AMR][1000 genomes]
rs10237217	1.00[AMR][1000 genomes]
rs10241938	1.00[AMR][1000 genomes]
rs10246249	1.00[AMR][1000 genomes]
rs10249232	1.00[AMR][1000 genomes]
rs10252450	1.00[AMR][1000 genomes]
rs10266285	1.00[AMR][1000 genomes]
rs10275109	1.00[AMR][1000 genomes]
rs10276286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971430	1.00[AMR][1000 genomes]
rs28513923	1.00[AMR][1000 genomes]
rs28624887	1.00[AMR][1000 genomes]
rs28755939	1.00[AMR][1000 genomes]
rs7810746	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830968	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv428163	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39215000-39247000	Weak transcription	Pancreas	Pancrea
2	chr7:39219200-39226400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:39222800-39225800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:39222800-39225800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:39223200-39224600	Enhancers	Fetal Intestine Small	intestine
6	chr7:39223800-39226000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:39224200-39224600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:39224400-39224600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:39224400-39226200	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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