Variant report

Variant	rs10252965
Chromosome Location	chr7:19822385-19822386
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM196-2	chr7:19822351-19822462	NONHSAT119391

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10228783	0.91[EUR][1000 genomes]
rs10231980	0.91[EUR][1000 genomes]
rs10239147	0.88[EUR][1000 genomes]
rs10243965	0.91[EUR][1000 genomes]
rs10249477	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10249635	0.91[EUR][1000 genomes]
rs10251774	0.91[EUR][1000 genomes]
rs10252597	0.91[EUR][1000 genomes]
rs10260866	0.91[EUR][1000 genomes]
rs10267417	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10270468	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10276518	0.88[EUR][1000 genomes]
rs10486365	0.92[EUR][1000 genomes]
rs12113916	0.88[EUR][1000 genomes]
rs12334001	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12334267	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12386623	0.91[EUR][1000 genomes]
rs12666488	0.91[EUR][1000 genomes]
rs12672257	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12672320	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12700075	0.91[EUR][1000 genomes]
rs12700077	0.91[EUR][1000 genomes]
rs1468287	0.91[EUR][1000 genomes]
rs17141882	0.91[EUR][1000 genomes]
rs17141884	0.91[EUR][1000 genomes]
rs17141945	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2189570	0.91[EUR][1000 genomes]
rs2390156	0.91[EUR][1000 genomes]
rs2390157	0.91[EUR][1000 genomes]
rs28537170	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28605851	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4719587	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4721824	0.91[EUR][1000 genomes]
rs61670426	0.91[EUR][1000 genomes]
rs6945297	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6945533	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6945753	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7798760	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1033223	chr7:19682192-20461375	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv538795	chr7:19682192-20461375	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv830918	chr7:19747674-19914527	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv1847477	chr7:19778086-19970584	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv971524	chr7:19814693-19827964	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv887826	chr7:19816240-20033899	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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