Variant report

Variant	rs12334267
Chromosome Location	chr7:19810265-19810266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10228783	1.00[EUR][1000 genomes]
rs10231980	1.00[EUR][1000 genomes]
rs10232870	1.00[CEU][hapmap]
rs10239147	0.97[EUR][1000 genomes]
rs10243965	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10249477	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10249635	1.00[EUR][1000 genomes]
rs10251774	1.00[EUR][1000 genomes]
rs10252597	1.00[EUR][1000 genomes]
rs10252965	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10260866	1.00[EUR][1000 genomes]
rs10267417	0.89[EUR][1000 genomes]
rs10269891	1.00[CEU][hapmap]
rs10270468	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10276518	0.97[EUR][1000 genomes]
rs10486365	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12113916	0.97[EUR][1000 genomes]
rs12334001	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12386623	1.00[EUR][1000 genomes]
rs12666488	1.00[EUR][1000 genomes]
rs12672257	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.94[TSI][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12672320	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12672557	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12673842	0.85[CEU][hapmap]
rs12700075	1.00[EUR][1000 genomes]
rs12700077	1.00[EUR][1000 genomes]
rs1468287	1.00[EUR][1000 genomes]
rs17141882	1.00[EUR][1000 genomes]
rs17141884	1.00[EUR][1000 genomes]
rs17141945	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2189570	1.00[EUR][1000 genomes]
rs2390156	1.00[EUR][1000 genomes]
rs2390157	1.00[EUR][1000 genomes]
rs28537170	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28605851	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4719587	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4721824	1.00[EUR][1000 genomes]
rs61670426	1.00[EUR][1000 genomes]
rs6945297	1.00[CEU][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6945533	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6945753	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs714238	0.88[ASN][1000 genomes]
rs7798760	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7812001	0.85[CHB][hapmap];0.87[CHD][hapmap];0.81[LWK][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1033223	chr7:19682192-20461375	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv538795	chr7:19682192-20461375	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv830918	chr7:19747674-19914527	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv1847477	chr7:19778086-19970584	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19808400-19811200	Weak transcription	Fetal Brain Female	brain
2	chr7:19809600-19813600	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr7:19809800-19811200	Weak transcription	Fetal Brain Male	brain
4	chr7:19810200-19811600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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