Variant report

Variant	rs12672557
Chromosome Location	chr7:19804237-19804238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10223937	0.80[EUR][1000 genomes]
rs10231972	0.80[EUR][1000 genomes]
rs10243965	0.82[ASN][1000 genomes]
rs10249477	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10260360	0.99[EUR][1000 genomes]
rs10260527	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10263564	0.86[EUR][1000 genomes]
rs10270468	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10486365	0.82[ASN][1000 genomes]
rs12334267	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12534026	0.80[EUR][1000 genomes]
rs12666159	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12672257	0.86[CHB][hapmap];0.85[YRI][hapmap]
rs12673970	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13230910	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13231036	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13233821	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17141945	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2158379	0.80[EUR][1000 genomes]
rs2892940	0.99[EUR][1000 genomes]
rs4719580	0.80[EUR][1000 genomes]
rs4719584	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4721823	0.80[EUR][1000 genomes]
rs4721825	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57916046	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6974669	0.99[EUR][1000 genomes]
rs6977660	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs714238	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714239	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71526305	0.80[EUR][1000 genomes]
rs7779902	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7791038	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7798760	0.96[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7812001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1033223	chr7:19682192-20461375	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv538795	chr7:19682192-20461375	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv830918	chr7:19747674-19914527	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv1847477	chr7:19778086-19970584	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19799600-19805000	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links