Variant report
Variant | rs10231972 |
---|---|
Chromosome Location | chr7:19789354-19789355 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10223937 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10228783 | 0.89[ASN][1000 genomes] |
rs10231980 | 0.90[ASN][1000 genomes] |
rs10239147 | 0.90[ASN][1000 genomes] |
rs10249635 | 0.90[ASN][1000 genomes] |
rs10251774 | 0.88[ASN][1000 genomes] |
rs10252597 | 0.87[ASN][1000 genomes] |
rs10260360 | 0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10950752 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12112698 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12386623 | 0.86[ASN][1000 genomes] |
rs12530799 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12534026 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12666488 | 0.90[ASN][1000 genomes] |
rs12672557 | 0.80[EUR][1000 genomes] |
rs12700075 | 0.87[ASN][1000 genomes] |
rs12700077 | 0.87[ASN][1000 genomes] |
rs13233821 | 0.85[MEX][hapmap] |
rs1468287 | 0.89[ASN][1000 genomes] |
rs17141882 | 0.88[ASN][1000 genomes] |
rs17141884 | 0.87[ASN][1000 genomes] |
rs17141889 | 0.90[ASN][1000 genomes] |
rs2158379 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2189570 | 0.86[ASN][1000 genomes] |
rs2390156 | 0.89[ASN][1000 genomes] |
rs2390157 | 0.89[ASN][1000 genomes] |
rs28545597 | 0.80[EUR][1000 genomes] |
rs2892940 | 0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4719580 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4721823 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4721824 | 0.89[ASN][1000 genomes] |
rs61670426 | 0.87[ASN][1000 genomes] |
rs6974669 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs714238 | 0.80[EUR][1000 genomes] |
rs71526305 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7812001 | 0.89[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.80[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1018601 | chr7:19272360-20008881 | Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 24 gene(s) | inside rSNPs | diseases |
2 | nsv1033223 | chr7:19682192-20461375 | Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
3 | nsv538795 | chr7:19682192-20461375 | Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
4 | nsv524807 | chr7:19714156-19803925 | Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA | 11 gene(s) | inside rSNPs | diseases |
5 | nsv830918 | chr7:19747674-19914527 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
6 | esv1847477 | chr7:19778086-19970584 | Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:19788200-19789600 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
2 | chr7:19789000-19789800 | Enhancers | HMEC | breast |
3 | chr7:19789000-19790200 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
4 | chr7:19789200-19789800 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
5 | chr7:19789200-19790000 | Enhancers | NHEK | skin |