Variant report

Variant	rs28545597
Chromosome Location	chr7:19763101-19763102
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:19745984..19749899-chr7:19759208..19763203,4	K562	blood:
2	chr7:19748303..19750459-chr7:19762352..19765154,2	K562	blood:

Variant related genes	Relation type
ENSG00000105849	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10223937	0.80[EUR][1000 genomes]
rs10231972	0.80[EUR][1000 genomes]
rs10255236	0.96[ASN][1000 genomes]
rs10266162	0.94[ASN][1000 genomes]
rs1029554	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10435066	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10435067	0.96[ASN][1000 genomes]
rs10486360	0.92[ASN][1000 genomes]
rs10486362	0.91[ASN][1000 genomes]
rs10950752	0.82[EUR][1000 genomes]
rs11974000	0.92[ASN][1000 genomes]
rs12112698	0.82[EUR][1000 genomes]
rs12534026	0.80[EUR][1000 genomes]
rs12673842	0.91[ASN][1000 genomes]
rs17141813	0.90[ASN][1000 genomes]
rs17141851	0.97[ASN][1000 genomes]
rs2072184	0.89[ASN][1000 genomes]
rs2072185	0.89[ASN][1000 genomes]
rs2072186	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2072187	0.91[ASN][1000 genomes]
rs2158379	0.80[EUR][1000 genomes]
rs2158381	0.96[ASN][1000 genomes]
rs2285928	0.94[ASN][1000 genomes]
rs28587039	0.97[ASN][1000 genomes]
rs28756683	0.97[ASN][1000 genomes]
rs3948699	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4719580	0.80[EUR][1000 genomes]
rs4721820	0.90[ASN][1000 genomes]
rs4721821	0.88[ASN][1000 genomes]
rs4721823	0.80[EUR][1000 genomes]
rs58559474	0.88[ASN][1000 genomes]
rs6961959	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs71526305	0.80[EUR][1000 genomes]
rs72591432	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7802120	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1033223	chr7:19682192-20461375	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv538795	chr7:19682192-20461375	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv524807	chr7:19714156-19803925	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv830918	chr7:19747674-19914527	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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