Variant report

Variant	rs2892940
Chromosome Location	chr7:19794750-19794751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:19793970..19794853-chr7:20212073..20212962,4	MCF-7	breast:
2	chr7:19794246..19794831-chr7:20237112..20238095,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10223937	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10228783	0.85[ASN][1000 genomes]
rs10231972	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10231980	0.86[ASN][1000 genomes]
rs10239147	0.86[ASN][1000 genomes]
rs10249635	0.86[ASN][1000 genomes]
rs10251774	0.88[ASN][1000 genomes]
rs10252597	0.88[ASN][1000 genomes]
rs10260360	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10260527	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10260866	0.82[ASN][1000 genomes]
rs10263564	0.84[EUR][1000 genomes]
rs10950752	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12112698	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12386623	0.90[ASN][1000 genomes]
rs12530799	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12534026	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12666159	0.95[EUR][1000 genomes]
rs12666488	0.86[ASN][1000 genomes]
rs12672557	0.99[EUR][1000 genomes]
rs12673970	0.87[EUR][1000 genomes]
rs12700075	0.88[ASN][1000 genomes]
rs12700077	0.88[ASN][1000 genomes]
rs13230910	0.95[EUR][1000 genomes]
rs13231036	0.92[EUR][1000 genomes]
rs13233821	0.86[EUR][1000 genomes]
rs1468287	0.86[ASN][1000 genomes]
rs17141882	0.88[ASN][1000 genomes]
rs17141884	0.88[ASN][1000 genomes]
rs17141889	0.93[ASN][1000 genomes]
rs2158379	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2189570	0.90[ASN][1000 genomes]
rs2390156	0.86[ASN][1000 genomes]
rs2390157	0.86[ASN][1000 genomes]
rs4719580	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4719584	0.86[EUR][1000 genomes]
rs4721823	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4721824	0.86[ASN][1000 genomes]
rs4721825	0.86[EUR][1000 genomes]
rs57916046	0.98[EUR][1000 genomes]
rs61670426	0.88[ASN][1000 genomes]
rs6974669	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977660	0.95[EUR][1000 genomes]
rs714238	0.99[EUR][1000 genomes]
rs714239	0.95[EUR][1000 genomes]
rs71526305	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7779902	0.95[EUR][1000 genomes]
rs7791038	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7812001	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1033223	chr7:19682192-20461375	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv538795	chr7:19682192-20461375	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv524807	chr7:19714156-19803925	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv830918	chr7:19747674-19914527	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv1847477	chr7:19778086-19970584	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19792000-19801000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:19794200-19794800	Enhancers	Pancreatic Islets	Pancreatic Islet

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