Variant report

Variant	rs10254040
Chromosome Location	chr7:83465287-83465288
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10224301	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10245587	0.86[EUR][1000 genomes]
rs10248473	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10248603	0.86[EUR][1000 genomes]
rs10248941	0.83[EUR][1000 genomes]
rs10251914	0.83[EUR][1000 genomes]
rs10253119	0.86[EUR][1000 genomes]
rs10264249	0.85[EUR][1000 genomes]
rs10270310	0.84[EUR][1000 genomes]
rs10275692	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1474450	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1474451	0.85[EUR][1000 genomes]
rs1474452	0.85[EUR][1000 genomes]
rs1526498	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17148226	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1990427	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2177910	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28669930	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4732523	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6467968	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6467969	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6467970	0.85[EUR][1000 genomes]
rs6942612	0.86[EUR][1000 genomes]
rs6965648	0.86[EUR][1000 genomes]
rs6977444	0.81[EUR][1000 genomes]
rs7778838	0.84[EUR][1000 genomes]
rs7802095	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7803071	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7803495	0.83[EUR][1000 genomes]
rs7803725	0.86[EUR][1000 genomes]
rs9690506	0.85[EUR][1000 genomes]
rs9692445	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888617	chr7:83352427-83479375	Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv607707	chr7:83381032-83646816	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1020865	chr7:83393101-83504439	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1017260	chr7:83393101-83506643	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888619	chr7:83452312-83549032	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv888620	chr7:83459908-83593805	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83460200-83465400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:83460200-83465800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:83460400-83478800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:83460600-83465600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:83461000-83465600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:83461800-83465400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:83463400-83465600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:83463800-83465400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:83464200-83474800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:83464800-83465600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr7:83464800-83466200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:83465000-83468800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:83465200-83465600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr7:83465200-83466200	Enhancers	GM12878-XiMat	blood

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