Variant report

Variant	rs10270310
Chromosome Location	chr7:83480417-83480418
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10224301	0.84[EUR][1000 genomes]
rs10231380	0.82[EUR][1000 genomes]
rs10245587	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10248473	0.85[EUR][1000 genomes]
rs10248603	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10248941	0.90[EUR][1000 genomes]
rs10251914	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10253119	0.91[EUR][1000 genomes]
rs10254040	0.84[EUR][1000 genomes]
rs10264249	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10275692	0.85[EUR][1000 genomes]
rs1474450	0.87[EUR][1000 genomes]
rs1474451	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1474452	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1526498	0.85[EUR][1000 genomes]
rs17148226	0.82[EUR][1000 genomes]
rs1990427	0.86[EUR][1000 genomes]
rs2177910	0.88[EUR][1000 genomes]
rs28669930	0.88[EUR][1000 genomes]
rs4732523	0.88[EUR][1000 genomes]
rs6467968	0.87[EUR][1000 genomes]
rs6467969	0.87[EUR][1000 genomes]
rs6942612	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6965648	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6977444	0.97[EUR][1000 genomes]
rs7778838	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7802095	0.84[EUR][1000 genomes]
rs7803071	0.84[EUR][1000 genomes]
rs7803495	0.90[EUR][1000 genomes]
rs7803725	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9690506	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9692445	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607707	chr7:83381032-83646816	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1020865	chr7:83393101-83504439	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1017260	chr7:83393101-83506643	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888619	chr7:83452312-83549032	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv888620	chr7:83459908-83593805	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1794884	chr7:83468908-83489827	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83477600-83480600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:83478600-83480600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr7:83479400-83480600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:83479600-83482000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:83479800-83482400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:83480000-83482000	Enhancers	HMEC	breast
7	chr7:83480200-83480600	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr7:83480400-83480800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:83480400-83481200	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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