Variant report

Variant	rs10254224
Chromosome Location	chr7:137509653-137509654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10230788	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10256707	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10257218	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10260637	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28408194	0.88[EUR][1000 genomes]
rs28491578	0.85[EUR][1000 genomes]
rs28634434	0.85[EUR][1000 genomes]
rs28892326	0.80[ASN][1000 genomes]
rs3823554	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6974718	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7796821	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137505600-137510200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:137505800-137513800	Weak transcription	Right Ventricle	heart
3	chr7:137505800-137514800	Weak transcription	Right Atrium	heart
4	chr7:137505800-137516200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:137506000-137516600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:137506200-137516600	Weak transcription	Fetal Brain Female	brain
7	chr7:137506200-137516800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:137506200-137517000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:137506200-137517000	Weak transcription	HSMMtube	muscle
10	chr7:137506400-137513200	Weak transcription	Fetal Stomach	stomach
11	chr7:137506600-137513200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:137506600-137513800	Weak transcription	Aorta	Aorta
13	chr7:137506800-137512200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:137506800-137514200	Weak transcription	Osteobl	bone
15	chr7:137506800-137516000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:137506800-137526400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:137509400-137512600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:137509600-137511200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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