Variant report

Variant	rs3823554
Chromosome Location	chr7:137514007-137514008
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10230788	0.82[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10254224	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10256707	0.82[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10257218	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10260637	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10277821	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs11980215	0.83[ASN][1000 genomes]
rs1871213	0.83[EUR][1000 genomes]
rs28408194	0.93[EUR][1000 genomes]
rs28491578	0.95[EUR][1000 genomes]
rs28634434	0.90[EUR][1000 genomes]
rs28892326	0.87[ASN][1000 genomes]
rs34309725	0.83[EUR][1000 genomes]
rs6974718	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6978230	0.81[EUR][1000 genomes]
rs7796821	0.82[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137505800-137514800	Weak transcription	Right Atrium	heart
2	chr7:137505800-137516200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:137506000-137516600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:137506200-137516600	Weak transcription	Fetal Brain Female	brain
5	chr7:137506200-137516800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:137506200-137517000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:137506200-137517000	Weak transcription	HSMMtube	muscle
8	chr7:137506800-137514200	Weak transcription	Osteobl	bone
9	chr7:137506800-137516000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:137506800-137526400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:137512000-137514600	Enhancers	Fetal Heart	heart
12	chr7:137512600-137514200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:137513000-137515200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:137513200-137515200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:137513200-137515400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:137513200-137515400	Enhancers	Adipose Nuclei	Adipose
17	chr7:137513800-137515400	Enhancers	Fetal Stomach	stomach
18	chr7:137514000-137514400	Weak transcription	Aorta	Aorta
19	chr7:137514000-137515000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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