Variant report

Variant	rs10277821
Chromosome Location	chr7:137520618-137520619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137505132..137508023-chr7:137518850..137521605,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10230788	0.82[CHB][hapmap]
rs10256707	0.84[CHB][hapmap]
rs10257218	0.87[ASN][1000 genomes]
rs10260637	0.82[CHB][hapmap];0.92[ASN][1000 genomes]
rs10954590	1.00[TSI][hapmap]
rs11980215	0.92[ASN][1000 genomes]
rs28892326	0.97[ASN][1000 genomes]
rs3735020	1.00[TSI][hapmap]
rs3800672	0.92[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3823554	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs6959012	1.00[TSI][hapmap]
rs6974718	0.97[ASN][1000 genomes]
rs6976928	1.00[TSI][hapmap]
rs7796821	0.84[CHB][hapmap];0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137506800-137526400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:137515200-137523600	Weak transcription	Aorta	Aorta
3	chr7:137516800-137523600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:137517800-137530400	Weak transcription	HSMMtube	muscle
5	chr7:137518600-137521200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:137518600-137523400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:137518800-137523400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:137518800-137523400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:137518800-137527400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:137518800-137527600	Weak transcription	Placenta	Placenta
11	chr7:137518800-137530400	Weak transcription	HSMM	muscle
12	chr7:137519200-137522200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:137519400-137520800	Enhancers	Brain Germinal Matrix	brain
14	chr7:137519400-137520800	Enhancers	Fetal Brain Female	brain
15	chr7:137519800-137523400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:137519800-137523600	Weak transcription	Adipose Nuclei	Adipose
17	chr7:137520200-137520800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:137520200-137520800	Enhancers	Brain Anterior Caudate	brain
19	chr7:137520200-137521800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr7:137520200-137522000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:137520200-137522400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr7:137520400-137521200	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:137520400-137521400	Enhancers	NH-A	brain
24	chr7:137520400-137521800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:137520400-137523400	Weak transcription	Fetal Brain Male	brain
26	chr7:137520600-137520800	Flanking Active TSS	Osteobl	bone
27	chr7:137520600-137523600	Weak transcription	Brain Angular Gyrus	brain

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