Variant report

Variant	rs11980215
Chromosome Location	chr7:137516941-137516942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10257218	0.85[ASN][1000 genomes]
rs10260637	0.90[ASN][1000 genomes]
rs10277821	0.92[ASN][1000 genomes]
rs28892326	0.95[ASN][1000 genomes]
rs3823554	0.83[ASN][1000 genomes]
rs6974718	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137506200-137517000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:137506200-137517000	Weak transcription	HSMMtube	muscle
3	chr7:137506800-137526400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:137514600-137519800	Weak transcription	Brain Angular Gyrus	brain
5	chr7:137515000-137517200	Weak transcription	Osteobl	bone
6	chr7:137515200-137523600	Weak transcription	Aorta	Aorta
7	chr7:137515400-137517000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:137516000-137517400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:137516000-137518600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:137516400-137518800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr7:137516600-137517600	ZNF genes & repeats	Fetal Brain Female	brain
12	chr7:137516600-137518800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:137516600-137519000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:137516800-137517400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:137516800-137517400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:137516800-137518600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
17	chr7:137516800-137518800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:137516800-137523600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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