Variant report

Variant	rs10254439
Chromosome Location	chr7:138035682-138035683
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10262321	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169585	1.00[CHB][hapmap]
rs1819966	0.97[ASN][1000 genomes]
rs28583294	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55674993	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55794944	0.97[ASN][1000 genomes]
rs56093444	0.97[ASN][1000 genomes]
rs56199969	0.97[ASN][1000 genomes]
rs73159914	0.91[ASN][1000 genomes]
rs73159932	0.97[ASN][1000 genomes]
rs73162206	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7457099	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803387	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808973	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	esv3348355	chr7:138022746-138072487	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138034400-138038800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr7:138034600-138036800	ZNF genes & repeats	K562	blood
3	chr7:138035600-138035800	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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