Variant report

Variant	rs10254656
Chromosome Location	chr7:21989414-21989415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10238000	0.85[AMR][1000 genomes]
rs10246345	1.00[AMR][1000 genomes]
rs10254992	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258599	0.85[AMR][1000 genomes]
rs10263850	0.85[AMR][1000 genomes]
rs1406706	0.94[ASN][1000 genomes]
rs17145921	0.98[ASN][1000 genomes]
rs17145923	1.00[ASN][1000 genomes]
rs28640950	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57121717	0.88[ASN][1000 genomes]
rs57454869	0.94[ASN][1000 genomes]
rs6944457	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv870325	chr7:21979039-22120493	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21986000-21989600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:21986000-21993200	Weak transcription	Ovary	ovary
3	chr7:21986200-21992800	Weak transcription	Fetal Heart	heart
4	chr7:21987400-21989600	Enhancers	Primary hematopoietic stem cells	blood
5	chr7:21987600-21989600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:21989000-21993600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:21989200-21994400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:21989400-21999200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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