Variant report

Variant	rs10258599
Chromosome Location	chr7:21987292-21987293
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10234020	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10238000	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10246345	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10254656	0.85[AMR][1000 genomes]
rs10254992	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10263850	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28640950	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6944457	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv870325	chr7:21979039-22120493	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21985800-21989200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr7:21986000-21987800	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr7:21986000-21988400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr7:21986000-21988600	Enhancers	Primary T cells from cord blood	blood
5	chr7:21986000-21988600	Enhancers	HUVEC	blood vessel
6	chr7:21986000-21989600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:21986000-21993200	Weak transcription	Ovary	ovary
8	chr7:21986200-21987400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:21986200-21987400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:21986200-21987600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:21986200-21988000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr7:21986200-21988200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr7:21986200-21988400	Enhancers	Primary B cells from peripheral blood	blood
14	chr7:21986200-21988600	Enhancers	Primary B cells from cord blood	blood
15	chr7:21986200-21988600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr7:21986200-21989000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr7:21986200-21992800	Weak transcription	Fetal Heart	heart
18	chr7:21986400-21988600	Weak transcription	Placenta	Placenta
19	chr7:21986400-21989200	Enhancers	GM12878-XiMat	blood
20	chr7:21986600-21989000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr7:21986800-21988400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr7:21986800-21988400	Weak transcription	Fetal Lung	lung
23	chr7:21987000-21987400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:21987000-21987400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:21987000-21987400	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr7:21987000-21987600	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr7:21987200-21988000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:21987200-21988400	Weak transcription	Fetal Thymus	thymus

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