Variant report

Variant	rs10255008
Chromosome Location	chr7:16064855-16064856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10226622	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333545	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28375119	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28428974	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28445173	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28470855	0.83[AMR][1000 genomes]
rs28671413	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60840202	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv517991	chr7:16042596-16104327	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1030165	chr7:16043678-16085488	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv518740	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv527277	chr7:16045794-16085019	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv606311	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16050000-16065200	Weak transcription	Osteobl	bone
2	chr7:16058200-16065400	Weak transcription	Aorta	Aorta
3	chr7:16061200-16068800	Enhancers	Rectal Smooth Muscle	rectum
4	chr7:16061800-16066000	Weak transcription	Fetal Muscle Leg	muscle
5	chr7:16061800-16066200	Weak transcription	Right Atrium	heart
6	chr7:16062400-16066800	Weak transcription	Adipose Nuclei	Adipose
7	chr7:16063200-16065200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:16063200-16065400	Weak transcription	Fetal Lung	lung
9	chr7:16064200-16068600	Enhancers	Colon Smooth Muscle	Colon
10	chr7:16064400-16065400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:16064400-16065400	Weak transcription	Psoas Muscle	Psoas
12	chr7:16064600-16066800	Enhancers	Fetal Heart	heart
13	chr7:16064600-16069000	Enhancers	HSMMtube	muscle
14	chr7:16064600-16069200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:16064800-16065200	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr7:16064800-16066000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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