Variant report

Variant	rs28445173
Chromosome Location	chr7:16073339-16073340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10226622	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10255008	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12333545	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28375119	0.83[AMR][1000 genomes]
rs28428974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28470855	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28671413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60840202	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv517991	chr7:16042596-16104327	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1030165	chr7:16043678-16085488	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv518740	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv527277	chr7:16045794-16085019	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv606311	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16066600-16074000	Weak transcription	Left Ventricle	heart
2	chr7:16066800-16080000	Weak transcription	Right Atrium	heart
3	chr7:16068600-16074000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:16068800-16073800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:16068800-16074200	Weak transcription	Osteobl	bone
6	chr7:16069000-16074200	Weak transcription	NHLF	lung
7	chr7:16069200-16073600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:16069200-16073800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:16069200-16074000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:16069600-16079200	Weak transcription	Fetal Lung	lung
11	chr7:16072600-16073800	Enhancers	Fetal Heart	heart
12	chr7:16072600-16075200	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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