Variant report

Variant	rs10255498
Chromosome Location	chr7:66336305-66336306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66333809..66336428-chr7:66342032..66344327,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10236434	1.00[AMR][1000 genomes]
rs10244204	0.87[ASW][hapmap];1.00[MEX][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10248036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10250162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10266087	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10266166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28415224	1.00[EUR][1000 genomes]
rs28436055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28438866	1.00[EUR][1000 genomes]
rs28619031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28649220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28828479	1.00[EUR][1000 genomes]
rs58669678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58739839	1.00[EUR][1000 genomes]
rs73700311	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
2	nsv888329	chr7:66234585-66376095	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv981514	chr7:66310139-66366240	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66310400-66337000	Weak transcription	Small Intestine	intestine
2	chr7:66311000-66339200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:66311000-66345800	Weak transcription	HSMMtube	muscle
4	chr7:66311000-66349400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:66311000-66358400	Weak transcription	Brain Anterior Caudate	brain
6	chr7:66311000-66368000	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:66311000-66385200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:66311200-66343000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:66311200-66385200	Weak transcription	Brain Angular Gyrus	brain
10	chr7:66314400-66342800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr7:66317200-66364400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr7:66319400-66364800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr7:66321200-66367800	Weak transcription	Aorta	Aorta
14	chr7:66321800-66337400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:66322400-66342600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:66322400-66364200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:66324400-66363800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:66325200-66360200	Weak transcription	Psoas Muscle	Psoas
19	chr7:66325200-66366400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:66325400-66351200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:66325400-66366400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:66325400-66369400	Weak transcription	Fetal Brain Female	brain
23	chr7:66325600-66345200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr7:66325600-66359000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr7:66325600-66363600	Weak transcription	Primary B cells from cord blood	blood
26	chr7:66325600-66363600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr7:66325600-66373000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr7:66325800-66343800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:66325800-66344200	Weak transcription	Left Ventricle	heart
30	chr7:66325800-66344200	Weak transcription	Pancreas	Pancrea
31	chr7:66325800-66344400	Weak transcription	NHEK	skin
32	chr7:66325800-66350000	Weak transcription	Dnd41	blood
33	chr7:66325800-66352800	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr7:66325800-66359600	Weak transcription	Spleen	Spleen
35	chr7:66325800-66363400	Weak transcription	Primary B cells from peripheral blood	blood
36	chr7:66325800-66363400	Weak transcription	Brain Substantia Nigra	brain
37	chr7:66325800-66365800	Weak transcription	Esophagus	oesophagus
38	chr7:66325800-66366400	Weak transcription	Right Ventricle	heart
39	chr7:66325800-66367000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr7:66325800-66367600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr7:66326000-66343800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:66326000-66349600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr7:66326000-66362000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr7:66326000-66363600	Weak transcription	Gastric	stomach
45	chr7:66326400-66358200	Weak transcription	Fetal Muscle Trunk	muscle
46	chr7:66326400-66362600	Weak transcription	Brain Hippocampus Middle	brain
47	chr7:66326400-66363000	Weak transcription	Lung	lung
48	chr7:66326400-66368200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr7:66326400-66371800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr7:66326600-66363000	Weak transcription	Fetal Stomach	stomach

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