Variant report

Variant	rs10255942
Chromosome Location	chr7:146736478-146736479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1024676	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10255503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs10281702	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10480369	0.89[ASN][1000 genomes]
rs13220975	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13222738	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1404155	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1404156	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1524341	0.88[CEU][hapmap]
rs1524342	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1524343	0.92[ASN][1000 genomes]
rs1608628	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1608629	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1608630	0.89[CEU][hapmap];0.91[JPT][hapmap]
rs1608631	0.83[JPT][hapmap]
rs17170304	0.81[ASN][1000 genomes]
rs1860477	0.89[CEU][hapmap]
rs2098114	0.96[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs2109306	0.82[CEU][hapmap]
rs2215338	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2372808	0.89[CEU][hapmap]
rs34962711	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs36031634	0.81[ASN][1000 genomes]
rs4585658	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4598172	0.89[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs62483988	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7782438	0.86[EUR][1000 genomes]
rs7812091	0.83[JPT][hapmap]
rs961180	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs982512	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs982514	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027561	chr7:146308783-146762872	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv465191	chr7:146406379-146759900	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv608941	chr7:146406379-146759900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1021251	chr7:146522341-146802125	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv531442	chr7:146669919-146755110	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv931938	chr7:146698437-146754853	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1029188	chr7:146699646-146756421	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1033175	chr7:146702080-146753471	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1029646	chr7:146702080-146788213	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1015266	chr7:146707047-146788213	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv2761380	chr7:146707059-146788225	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1034510	chr7:146719973-146848581	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
14	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
15	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links