Variant report

Variant	rs1608631
Chromosome Location	chr7:146695674-146695675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1024676	0.96[CEU][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap]
rs10255503	0.83[JPT][hapmap]
rs10255942	0.83[JPT][hapmap]
rs10281702	0.96[CEU][hapmap];0.83[JPT][hapmap];0.89[YRI][hapmap]
rs13220975	0.96[CEU][hapmap];0.83[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13222738	0.96[CEU][hapmap];0.83[JPT][hapmap];0.81[YRI][hapmap]
rs1404155	0.95[CEU][hapmap];0.81[JPT][hapmap];0.96[EUR][1000 genomes]
rs1404156	1.00[CEU][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes]
rs1524342	0.96[CEU][hapmap];0.83[JPT][hapmap]
rs1524343	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs1608628	0.82[JPT][hapmap]
rs1608629	0.82[JPT][hapmap];0.89[YRI][hapmap]
rs1608630	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs17170304	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2215338	1.00[CEU][hapmap];0.83[JPT][hapmap];0.86[YRI][hapmap]
rs34962711	0.96[CEU][hapmap];0.83[JPT][hapmap]
rs35013414	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36031634	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4585658	1.00[CEU][hapmap];0.83[JPT][hapmap];0.89[YRI][hapmap]
rs4598172	0.83[JPT][hapmap]
rs7782438	0.82[ASN][1000 genomes]
rs7812091	0.96[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap]
rs961180	0.83[JPT][hapmap]
rs982512	0.82[JPT][hapmap]
rs982514	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027561	chr7:146308783-146762872	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv465191	chr7:146406379-146759900	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv608941	chr7:146406379-146759900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv534580	chr7:146451347-146730531	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1021251	chr7:146522341-146802125	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv497792	chr7:146526101-146734852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv531442	chr7:146669919-146755110	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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