Variant report

Variant	rs10256233
Chromosome Location	chr7:13575893-13575894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10231267	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499429	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12699509	0.84[EUR][1000 genomes]
rs12699514	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12699515	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12699522	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12699523	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12699524	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699525	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699526	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12699527	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12699533	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13222945	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13223388	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13223397	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13225414	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234879	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13237232	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13238361	0.89[EUR][1000 genomes]
rs13243009	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13243211	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17194917	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34575271	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34817842	0.89[EUR][1000 genomes]
rs35137805	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35519947	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35553190	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35657075	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35907984	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36068685	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4721234	0.89[EUR][1000 genomes]
rs4721237	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6951342	0.84[AMR][1000 genomes]
rs6955662	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6961459	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6978901	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6979071	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7778160	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7789334	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs869552	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019173	chr7:13063854-13585360	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538737	chr7:13063854-13585360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1023580	chr7:13403531-13624975	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1022312	chr7:13561595-13576298	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13575400-13576000	Enhancers	Muscle Satellite Cultured Cells	--

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