Variant report

Variant	rs869552
Chromosome Location	chr7:13564811-13564812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:13564462..13565362-chr7:14497193..14498173,5	MCF-7	breast:
2	chr7:13564573..13565453-chr7:16110838..16111563,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10231267	0.85[EUR][1000 genomes]
rs10256233	0.91[EUR][1000 genomes]
rs10499429	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699509	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699514	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699515	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699521	1.00[ASN][1000 genomes]
rs12699522	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699523	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699524	0.85[EUR][1000 genomes]
rs12699525	0.85[EUR][1000 genomes]
rs12699526	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699527	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699533	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13222945	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223388	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223397	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13225414	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13226153	1.00[ASN][1000 genomes]
rs13226865	1.00[ASN][1000 genomes]
rs13229998	1.00[ASN][1000 genomes]
rs13230082	1.00[ASN][1000 genomes]
rs13233758	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13234130	1.00[ASN][1000 genomes]
rs13234879	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13235921	1.00[ASN][1000 genomes]
rs13237232	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238361	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13243009	0.90[EUR][1000 genomes]
rs13243211	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1357978	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1357979	1.00[ASN][1000 genomes]
rs1525678	1.00[ASN][1000 genomes]
rs17194917	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34575271	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34817842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35137805	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35519947	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35553190	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35657075	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35907373	1.00[ASN][1000 genomes]
rs35907984	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36068685	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4721234	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4721237	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67184261	1.00[ASN][1000 genomes]
rs6951342	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955662	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961459	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978901	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979071	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778160	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7789334	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019173	chr7:13063854-13585360	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538737	chr7:13063854-13585360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1023580	chr7:13403531-13624975	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1022312	chr7:13561595-13576298	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs869552	BCR	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13564600-13565000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr7:13564800-13565200	Enhancers	NHDF-Ad	bronchial

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