Variant report
| Variant | rs13235921 |
|---|---|
| Chromosome Location | chr7:13637247-13637248 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:47)
| rs_ID | r2[population] |
|---|---|
| rs10499429 | 1.00[ASN][1000 genomes] |
| rs12699509 | 1.00[ASN][1000 genomes] |
| rs12699514 | 1.00[ASN][1000 genomes] |
| rs12699515 | 1.00[ASN][1000 genomes] |
| rs12699521 | 1.00[ASN][1000 genomes] |
| rs12699522 | 1.00[ASN][1000 genomes] |
| rs12699523 | 1.00[ASN][1000 genomes] |
| rs12699526 | 1.00[ASN][1000 genomes] |
| rs12699527 | 1.00[ASN][1000 genomes] |
| rs12699533 | 1.00[ASN][1000 genomes] |
| rs13222945 | 1.00[ASN][1000 genomes] |
| rs13223388 | 1.00[ASN][1000 genomes] |
| rs13223397 | 1.00[ASN][1000 genomes] |
| rs13226153 | 1.00[ASN][1000 genomes] |
| rs13226865 | 1.00[ASN][1000 genomes] |
| rs13229998 | 1.00[ASN][1000 genomes] |
| rs13230082 | 1.00[ASN][1000 genomes] |
| rs13233758 | 1.00[ASN][1000 genomes] |
| rs13234130 | 1.00[ASN][1000 genomes] |
| rs13234879 | 1.00[ASN][1000 genomes] |
| rs13237232 | 1.00[ASN][1000 genomes] |
| rs13238361 | 1.00[ASN][1000 genomes] |
| rs13243211 | 1.00[ASN][1000 genomes] |
| rs1357978 | 1.00[ASN][1000 genomes] |
| rs1357979 | 1.00[ASN][1000 genomes] |
| rs1525678 | 1.00[ASN][1000 genomes] |
| rs17194917 | 1.00[ASN][1000 genomes] |
| rs34575271 | 1.00[ASN][1000 genomes] |
| rs34817842 | 1.00[ASN][1000 genomes] |
| rs35137805 | 1.00[ASN][1000 genomes] |
| rs35519947 | 1.00[ASN][1000 genomes] |
| rs35553190 | 1.00[ASN][1000 genomes] |
| rs35657075 | 1.00[ASN][1000 genomes] |
| rs35907373 | 1.00[ASN][1000 genomes] |
| rs35907984 | 1.00[ASN][1000 genomes] |
| rs36068685 | 1.00[ASN][1000 genomes] |
| rs4721234 | 1.00[ASN][1000 genomes] |
| rs4721237 | 1.00[ASN][1000 genomes] |
| rs67184261 | 1.00[ASN][1000 genomes] |
| rs6951342 | 1.00[ASN][1000 genomes] |
| rs6955662 | 1.00[ASN][1000 genomes] |
| rs6961459 | 1.00[ASN][1000 genomes] |
| rs6978901 | 1.00[ASN][1000 genomes] |
| rs6979071 | 1.00[ASN][1000 genomes] |
| rs7778160 | 1.00[ASN][1000 genomes] |
| rs7789334 | 1.00[ASN][1000 genomes] |
| rs869552 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv887690 | chr7:13591197-13702169 | Enhancers Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv1026929 | chr7:13597929-13716063 | Enhancers ZNF genes & repeats Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv1023839 | chr7:13617615-13735946 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs13235921 | NRCAM | trans | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:13637200-13637800 | Enhancers | Fetal Intestine Small | intestine |
