Variant report

Variant	rs10256660
Chromosome Location	chr7:40364588-40364589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10227645	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10229210	0.88[CEU][hapmap]
rs10236169	0.96[CEU][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs10238411	0.88[CEU][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs10259706	0.88[CEU][hapmap]
rs10261478	1.00[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10263744	0.88[CEU][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap]
rs11764628	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11768037	0.84[CEU][hapmap]
rs11771964	1.00[CEU][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11772072	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12669999	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1532722	0.88[CEU][hapmap]
rs17171685	0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2329774	1.00[ASN][1000 genomes]
rs2329775	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs34398005	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34487990	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3857747	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4134194	0.88[CEU][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap]
rs4257934	0.96[CEU][hapmap]
rs4286851	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4332041	0.93[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4360204	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4364550	0.88[CEU][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap]
rs4534056	1.00[ASN][1000 genomes]
rs4613890	1.00[CEU][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4640968	0.88[CEU][hapmap]
rs4723951	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723962	0.87[CEU][hapmap];0.91[TSI][hapmap]
rs55803016	1.00[ASN][1000 genomes]
rs56089082	1.00[ASN][1000 genomes]
rs56133304	1.00[ASN][1000 genomes]
rs57393082	1.00[ASN][1000 genomes]
rs58612672	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59070247	1.00[ASN][1000 genomes]
rs60288145	1.00[ASN][1000 genomes]
rs60631055	1.00[ASN][1000 genomes]
rs60765497	1.00[ASN][1000 genomes]
rs6462979	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73688044	1.00[ASN][1000 genomes]
rs73688046	1.00[ASN][1000 genomes]
rs73688047	1.00[ASN][1000 genomes]
rs73688050	1.00[ASN][1000 genomes]
rs73688052	1.00[ASN][1000 genomes]
rs73688056	1.00[ASN][1000 genomes]
rs73688058	1.00[ASN][1000 genomes]
rs73688060	1.00[ASN][1000 genomes]
rs73688062	1.00[ASN][1000 genomes]
rs7779860	0.88[CEU][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap]
rs7782097	0.88[CEU][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap]
rs8180744	0.88[CEU][hapmap]
rs9648486	0.88[CEU][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032278	chr7:40097371-40396300	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv887985	chr7:40265510-40586674	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1033564	chr7:40273845-40417886	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817404	chr7:40295934-40573605	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv887986	chr7:40311382-40425140	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv949540	chr7:40321357-40528147	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv520748	chr7:40332518-40425140	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1017909	chr7:40337109-40427634	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv824081	chr7:40363981-40368738	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40356200-40366600	Weak transcription	Liver	Liver
2	chr7:40356600-40365600	Weak transcription	HSMM	muscle
3	chr7:40363200-40372000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:40363800-40369600	Weak transcription	Fetal Heart	heart
5	chr7:40364200-40364600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:40364200-40364800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:40364200-40364800	Enhancers	Osteobl	bone
8	chr7:40364200-40365000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:40364200-40365200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:40364200-40365800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:40364200-40366200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:40364400-40364800	Enhancers	NH-A	brain
13	chr7:40364400-40365000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:40364400-40370600	Weak transcription	Aorta	Aorta

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