Variant report

Variant	rs2329774
Chromosome Location	chr7:40481695-40481696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10227645	1.00[ASN][1000 genomes]
rs10229210	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10241646	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10256660	1.00[ASN][1000 genomes]
rs10259706	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10263744	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11771964	0.82[AMR][1000 genomes]
rs11772072	0.81[AMR][1000 genomes]
rs12234882	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2329775	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34487990	0.81[EUR][1000 genomes]
rs3857747	1.00[ASN][1000 genomes]
rs4134194	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4236367	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4286851	1.00[ASN][1000 genomes]
rs4364550	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4534056	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4613890	0.82[AMR][1000 genomes]
rs4640968	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4723951	1.00[ASN][1000 genomes]
rs4723961	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4723962	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55803016	1.00[ASN][1000 genomes]
rs56089082	1.00[ASN][1000 genomes]
rs56133304	1.00[ASN][1000 genomes]
rs57393082	1.00[ASN][1000 genomes]
rs59070247	1.00[ASN][1000 genomes]
rs60288145	1.00[ASN][1000 genomes]
rs60631055	1.00[ASN][1000 genomes]
rs60765497	1.00[ASN][1000 genomes]
rs6462979	0.84[AMR][1000 genomes]
rs73688044	1.00[ASN][1000 genomes]
rs73688046	1.00[ASN][1000 genomes]
rs73688047	1.00[ASN][1000 genomes]
rs73688050	1.00[ASN][1000 genomes]
rs73688052	1.00[ASN][1000 genomes]
rs73688056	1.00[ASN][1000 genomes]
rs73688058	1.00[ASN][1000 genomes]
rs73688060	1.00[ASN][1000 genomes]
rs73688062	1.00[ASN][1000 genomes]
rs7779860	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7782097	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7785515	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7803105	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8180744	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9648486	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv887985	chr7:40265510-40586674	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv817404	chr7:40295934-40573605	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv949540	chr7:40321357-40528147	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv34484	chr7:40383159-40489083	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2757223	chr7:40384030-40497278	Weak transcription Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2759526	chr7:40384030-40497278	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv8081	chr7:40393228-40486239	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv830969	chr7:40422576-40582389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1032883	chr7:40440560-40489083	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1017615	chr7:40445480-40570791	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40480400-40481800	ZNF genes & repeats	HSMM	muscle
2	chr7:40480600-40482000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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