Variant report

Variant	rs10256854
Chromosome Location	chr7:136612314-136612315
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10231447	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10250438	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10266430	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10267949	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10271808	1.00[EUR][1000 genomes]
rs11767373	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11773196	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13233064	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17133376	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168796	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs35012887	0.82[AMR][1000 genomes]
rs35217852	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136607800-136638000	Weak transcription	NHLF	lung
2	chr7:136609600-136613600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:136610800-136623400	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:136611000-136616400	Weak transcription	Right Atrium	heart
5	chr7:136611000-136623200	Weak transcription	Left Ventricle	heart
6	chr7:136611800-136614600	Enhancers	Fetal Heart	heart
7	chr7:136612000-136614200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:136612000-136614200	Weak transcription	HUVEC	blood vessel
9	chr7:136612200-136613400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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