Variant report

Variant	rs11773196
Chromosome Location	chr7:136605308-136605309
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10231447	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10250438	1.00[EUR][1000 genomes]
rs10256854	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10266430	0.95[EUR][1000 genomes]
rs10267949	1.00[EUR][1000 genomes]
rs10271808	1.00[EUR][1000 genomes]
rs11767373	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13233064	1.00[EUR][1000 genomes]
rs17133376	1.00[EUR][1000 genomes]
rs17168796	1.00[EUR][1000 genomes]
rs35012887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35217852	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136588200-136605600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:136596400-136607200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:136601600-136609600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:136603800-136609400	Weak transcription	Fetal Stomach	stomach
6	chr7:136604400-136605400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr7:136604400-136605800	Enhancers	NHLF	lung
8	chr7:136604400-136606400	Genic enhancers	Fetal Heart	heart
9	chr7:136604400-136607600	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:136605200-136605800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:136605200-136612200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links