Variant report

Variant	rs10256879
Chromosome Location	chr7:117541778-117541779
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10277241	1.00[ASN][1000 genomes]
rs34069646	1.00[ASN][1000 genomes]
rs34156042	1.00[ASN][1000 genomes]
rs34261891	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35014830	1.00[ASN][1000 genomes]
rs35535133	1.00[ASN][1000 genomes]
rs6466641	1.00[ASN][1000 genomes]
rs73716379	1.00[ASN][1000 genomes]
rs73716380	1.00[ASN][1000 genomes]
rs73716381	1.00[ASN][1000 genomes]
rs73716384	1.00[ASN][1000 genomes]
rs7808654	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117535600-117542600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:117541000-117541800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr7:117541000-117542000	Enhancers	Fetal Intestine Small	intestine
4	chr7:117541000-117542400	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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