Variant report

Variant	rs73716380
Chromosome Location	chr7:117586422-117586423
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10256879	1.00[ASN][1000 genomes]
rs10277241	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34069646	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34156042	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34261891	1.00[ASN][1000 genomes]
rs35014830	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35535133	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57879132	0.81[AFR][1000 genomes]
rs6466641	1.00[ASN][1000 genomes]
rs73716379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73716381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73716384	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117584600-117587000	Enhancers	Fetal Lung	lung
2	chr7:117585400-117587000	Enhancers	Fetal Kidney	kidney
3	chr7:117585600-117587400	Enhancers	Fetal Stomach	stomach
4	chr7:117585800-117587200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:117585800-117587600	Enhancers	HMEC	breast
6	chr7:117586000-117587400	Enhancers	NHEK	skin
7	chr7:117586200-117587000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:117586200-117587000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:117586200-117587000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:117586400-117586800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:117586400-117586800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:117586400-117586800	Enhancers	NH-A	brain
13	chr7:117586400-117587000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:117586400-117587000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr7:117586400-117587000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:117586400-117587000	Enhancers	Hela-S3	cervix
17	chr7:117586400-117587200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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