Variant report
| Variant | rs57879132 |
|---|---|
| Chromosome Location | chr7:117572809-117572810 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:116434729-116454408..7:117569455-117577236 | H1-hESC | embryonic stem cell: | embryo |
| 2 | chr7:117545017..117547997-chr7:117572368..117574500,2 | K562 | blood: | |
| 3 | 7:117100350-117112126..7:117569455-117577236 | GM12878 | blood: | |
| 4 | 7:116957165-116964911..7:117569455-117577236 | H1-hESC | embryonic stem cell: | embryo |
| 5 | 7:116604327-116608063..7:117569455-117577236 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000198898 | Chromatin interaction |
| ENSG00000105989 | Chromatin interaction |
| ENSG00000228368 | Chromatin interaction |
| ENSG00000001626 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs34069646 | 0.81[AFR][1000 genomes] |
| rs34156042 | 0.81[AFR][1000 genomes] |
| rs35535133 | 0.81[AFR][1000 genomes] |
| rs55994200 | 1.00[AMR][1000 genomes] |
| rs73716379 | 0.81[AFR][1000 genomes] |
| rs73716380 | 0.81[AFR][1000 genomes] |
| rs73716381 | 0.81[AFR][1000 genomes] |
| rs73716398 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73716400 | 1.00[AMR][1000 genomes] |
| rs7808654 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869971 | chr7:117420583-118274149 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
