Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10175150	0.88[ASN][1000 genomes]
rs10175396	0.83[ASN][1000 genomes]
rs10179912	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10182007	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10187979	0.89[ASN][1000 genomes]
rs10201742	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1025788	0.87[AFR][1000 genomes]
rs11885234	0.88[ASN][1000 genomes]
rs13413036	0.83[ASN][1000 genomes]
rs1440050	0.82[ASN][1000 genomes]
rs1550402	0.88[ASN][1000 genomes]
rs2083414	0.94[ASN][1000 genomes]
rs28479667	0.83[ASN][1000 genomes]
rs62159921	0.83[ASN][1000 genomes]
rs6728481	0.88[ASN][1000 genomes]
rs6729313	0.83[ASN][1000 genomes]
rs6758976	0.94[ASN][1000 genomes]
rs7591893	0.82[ASN][1000 genomes]
rs920438	0.88[ASN][1000 genomes]
rs958916	0.82[ASN][1000 genomes]
rs961447	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002265	chr2:127029745-127733458	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535919	chr2:127029745-127733458	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3395703	chr2:127309762-127404005	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1025789	KCNK7	trans	parietal	SCAN
rs1025789	CYP27C1	cis	cerebellum	SCAN
rs1025789	CYP27C1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127324600-127333000	Weak transcription	Fetal Brain Male	brain

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