Variant report

Variant	rs961447
Chromosome Location	chr2:127292596-127292597
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10175150	0.82[ASN][1000 genomes]
rs10179912	1.00[JPT][hapmap];0.86[YRI][hapmap]
rs10182007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10194561	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10203788	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1025789	0.82[ASN][1000 genomes]
rs11885234	0.82[ASN][1000 genomes]
rs13382980	0.86[AFR][1000 genomes]
rs13386710	0.86[AFR][1000 genomes]
rs13415629	0.81[AFR][1000 genomes]
rs13419397	0.86[AFR][1000 genomes]
rs13425593	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13425595	0.81[AFR][1000 genomes]
rs1440050	1.00[ASN][1000 genomes]
rs1550402	0.82[ASN][1000 genomes]
rs4577234	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56896312	0.86[AFR][1000 genomes]
rs6431080	0.86[AFR][1000 genomes]
rs6431081	0.86[AFR][1000 genomes]
rs6431097	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6727953	0.94[ASN][1000 genomes]
rs6728481	0.82[ASN][1000 genomes]
rs6753696	0.89[EUR][1000 genomes]
rs7590145	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7591893	1.00[ASN][1000 genomes]
rs7598155	0.93[EUR][1000 genomes]
rs7598599	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7599552	0.86[AFR][1000 genomes]
rs920438	0.82[ASN][1000 genomes]
rs958916	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001995	chr2:126506739-127314488	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1002265	chr2:127029745-127733458	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv535919	chr2:127029745-127733458	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127289200-127292800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr2:127290200-127295600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:127290400-127293200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr2:127290800-127295600	Enhancers	Primary hematopoietic stem cells	blood
5	chr2:127291800-127293200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr2:127292000-127293400	Enhancers	Spleen	Spleen
7	chr2:127292200-127293000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:127292400-127295800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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