Variant report
| Variant | rs6727953 |
|---|---|
| Chromosome Location | chr2:127287178-127287179 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10182007 | 0.94[ASN][1000 genomes] |
| rs10194561 | 0.88[ASN][1000 genomes] |
| rs10203788 | 0.88[ASN][1000 genomes] |
| rs13382980 | 0.92[EUR][1000 genomes] |
| rs13386710 | 0.92[EUR][1000 genomes] |
| rs13413216 | 0.86[EUR][1000 genomes] |
| rs13415629 | 0.92[EUR][1000 genomes] |
| rs13419397 | 0.92[EUR][1000 genomes] |
| rs13425595 | 0.92[EUR][1000 genomes] |
| rs1440050 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs56896312 | 0.92[EUR][1000 genomes] |
| rs6431080 | 0.92[EUR][1000 genomes] |
| rs6431081 | 0.92[EUR][1000 genomes] |
| rs6431097 | 0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7590145 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7591893 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7598155 | 0.83[ASN][1000 genomes] |
| rs7599320 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7599552 | 0.92[EUR][1000 genomes] |
| rs7606965 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs958916 | 0.94[ASN][1000 genomes] |
| rs961447 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001995 | chr2:126506739-127314488 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1002265 | chr2:127029745-127733458 | Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv535919 | chr2:127029745-127733458 | Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:127286000-127288400 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
