Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10194561	0.88[ASN][1000 genomes]
rs10203788	0.88[ASN][1000 genomes]
rs13382980	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13386710	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13415629	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13419397	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13425595	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1440050	0.83[EUR][1000 genomes]
rs56896312	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62159889	0.82[ASN][1000 genomes]
rs6431080	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6431081	0.92[EUR][1000 genomes]
rs6431097	0.87[EUR][1000 genomes]
rs6727953	0.86[EUR][1000 genomes]
rs6753696	1.00[ASN][1000 genomes]
rs7590145	0.87[EUR][1000 genomes]
rs7591893	0.88[EUR][1000 genomes]
rs7598155	0.94[ASN][1000 genomes]
rs7599320	0.93[EUR][1000 genomes]
rs7599552	0.92[EUR][1000 genomes]
rs7606965	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001995	chr2:126506739-127314488	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1002265	chr2:127029745-127733458	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv535919	chr2:127029745-127733458	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv834364	chr2:127100752-127267070	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127255800-127264600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:127261000-127264200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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