Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13382980	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13386710	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13413216	0.93[EUR][1000 genomes]
rs13415629	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13419397	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13425593	0.98[ASN][1000 genomes]
rs13425595	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1440050	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4577234	1.00[ASN][1000 genomes]
rs56896312	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6431080	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6431081	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6431097	0.92[EUR][1000 genomes]
rs6727953	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7590145	0.92[EUR][1000 genomes]
rs7591893	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7598599	1.00[ASN][1000 genomes]
rs7599552	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7604896	0.83[EUR][1000 genomes]
rs7606965	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001995	chr2:126506739-127314488	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1002265	chr2:127029745-127733458	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv535919	chr2:127029745-127733458	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127265200-127268400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:127265200-127270000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:127265400-127270600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:127267200-127269200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:127267200-127269200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:127267400-127268600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr2:127267600-127268400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr2:127267800-127268600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr2:127267800-127268600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr2:127268000-127268200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:127268000-127268400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr2:127268000-127268400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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