Variant report

Variant	rs13425593
Chromosome Location	chr2:127265600-127265601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10182007	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10194561	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10203788	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13382980	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13386710	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13415629	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13419397	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13425595	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4577234	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56896312	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6431080	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6431081	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6753696	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7598155	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7598599	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7599320	0.98[ASN][1000 genomes]
rs7599552	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs958916	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs961447	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001995	chr2:126506739-127314488	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1002265	chr2:127029745-127733458	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv535919	chr2:127029745-127733458	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv834364	chr2:127100752-127267070	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127264200-127265600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:127264400-127265800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:127264600-127265800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:127265000-127265600	Enhancers	Brain Germinal Matrix	brain
5	chr2:127265000-127265600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr2:127265200-127267400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr2:127265200-127268400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:127265200-127270000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:127265400-127265600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr2:127265400-127268000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr2:127265400-127270600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr2:127265600-127267800	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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